3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02903

Details:

PFam ID : PF02903

PFam Domain Description : Alpha amylase, N-terminal ig-like domain

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 283

Average sequence length: 114.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02903	E7IKI3_ECOLX_8_86	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02903	A4SHI8_AERS4_1_114	100

Sequence based PCA Plot of the family - PF02903 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=63 Length=8
Motif3 Start=1 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay