3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02902

Details:

PFam ID : PF02902

PFam Domain Description : Ulp1 protease family, C-terminal catalytic domain

Number of Sequence in 50% Dataset : 582

Number of Sequence in Full Dataset : 1385

Average sequence length: 163.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02902	A7T377_NEMVE_344_451	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02902	C5YEE4_SORBI_35_105	99.2

Sequence based PCA Plot of the family - PF02902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=295 Length=8
Motif3 Start=342 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay