3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02900

Details:

PFam ID : PF02900

PFam Domain Description : Catalytic LigB subunit of aromatic ring-opening dioxygenase

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 1001

Average sequence length: 254.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02900	C7N1M6_SLAHD_5_136	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02900	D9VDN6_9ACTO_6_327	100

Sequence based PCA Plot of the family - PF02900 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=160 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay