3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02898

Details:

PFam ID : PF02898

PFam Domain Description : Nitric oxide synthase, oxygenase domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 159

Average sequence length: 302.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02898	D2V8T5_NAEGR_18_395	57.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02898	F1RKF2_PIG_354_721	98.7

Sequence based PCA Plot of the family - PF02898 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=102 Length=8
Motif3 Start=216 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay