3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02894

Details:

PFam ID : PF02894

PFam Domain Description : Oxidoreductase family, C-terminal alpha/beta domain

Number of Sequence in 50% Dataset : 540

Number of Sequence in Full Dataset : 4303

Average sequence length: 106.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02894	A9ZH13_COXBU_117_199	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02894	F2B1P9_RHOBA_164_268	99.5

Sequence based PCA Plot of the family - PF02894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=8
Motif2 Start=124 Length=8
Motif3 Start=113 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay