3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02893

Details:

PFam ID : PF02893

PFam Domain Description : GRAM domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 701

Average sequence length: 70.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02893	E2B9I9_9HYME_123_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02893	F2U0L4_9EUKA_507_576	98.4

Sequence based PCA Plot of the family - PF02893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay