3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02892

Details:

PFam ID : PF02892

PFam Domain Description : BED zinc finger

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 481

Average sequence length: 46.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02892	E2B9I9_9HYME_123_181	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02892	E9EJ38_METAR_84_135	98.5

Sequence based PCA Plot of the family - PF02892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=17
Motif2 Start=10 Length=14
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay