3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02891

Details:

PFam ID : PF02891

PFam Domain Description : MIZ/SP-RING zinc finger

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 284

Average sequence length: 50.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02891	A2FSF1_TRIVA_257_303	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02891	E4YCX1_OIKDI_173_230	99.6

Sequence based PCA Plot of the family - PF02891 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay