3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02890 Details: PFam ID : PF02890 PFam Domain Description : Borrelia family of unknown function DUF226 Number of Sequence in 50% Dataset : 19 Number of Sequence in Full Dataset : 94 Average sequence length: 122.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02890B8DXN6_BORAF_1_5233.3 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF02890Q5XZ21_BORGA_1_35100 Sequence based PCA Plot of the family - PF02890 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=36 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF02890
PFam Domain Description : Borrelia family of unknown function DUF226
Number of Sequence in 50% Dataset : 19
Number of Sequence in Full Dataset : 94
Average sequence length: 122.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER