3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02888

Details:

PFam ID : PF02888

PFam Domain Description : Calmodulin binding domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 37

Average sequence length: 68.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02888	E1GS90_LOALO_1_57	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02888	F1L3G9_ASCSU_368_448	100

Sequence based PCA Plot of the family - PF02888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay