3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02886

Details:

PFam ID : PF02886

PFam Domain Description : LBP / BPI / CETP family, C-terminal domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 211

Average sequence length: 207.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02886	E1UYU3_RUPRU_236_339	77.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02886	D8TG90_SELML_250_501	100

Sequence based PCA Plot of the family - PF02886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=28 Length=8
Motif3 Start=198 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay