3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02885

Details:

PFam ID : PF02885

PFam Domain Description : Glycosyl transferase family, helical bundle domain

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 1926

Average sequence length: 65.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02885	Q7MP31_VIBVY_685_779	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02885	D3X723_9ACTO_10_73	100

Sequence based PCA Plot of the family - PF02885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay