3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02883

Details:

PFam ID : PF02883

PFam Domain Description : Adaptin C-terminal domain

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 443

Average sequence length: 108.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02883	F1MIB5_BOVIN_1_61	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02883	C5DIR9_LACTC_714_830	90.4

Sequence based PCA Plot of the family - PF02883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=47 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay