3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02882

Details:

PFam ID : PF02882

PFam Domain Description : Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 1515

Average sequence length: 156.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02882	C6KTE2_PLAF7_418_490	68.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02882	D4KCH3_9FIRM_85_269	100

Sequence based PCA Plot of the family - PF02882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=120 Length=14
Motif2 Start=44 Length=17
Motif3 Start=15 Length=11
Motif4 Start=152 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay