3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02875

Details:

PFam ID : PF02875

PFam Domain Description : Mur ligase family, glutamate ligase domain

Number of Sequence in 50% Dataset : 217

Number of Sequence in Full Dataset : 5984

Average sequence length: 85.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02875	D5Y501_MYCTU_356_399	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02875	B6AQL1_9BACT_342_439	90.3

Sequence based PCA Plot of the family - PF02875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=26
Motif2 Start=43 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay