3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02874

Details:

PFam ID : PF02874

PFam Domain Description : ATP synthase alpha/beta family, beta-barrel domain

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 3423

Average sequence length: 66.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02874	D9PM88_9ZZZZ_22_106	21.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02874	Q1PVR7_9BACT_5_72	46

Sequence based PCA Plot of the family - PF02874 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=28 Length=8
Motif3 Start=13 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay