3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02873

Details:

PFam ID : PF02873

PFam Domain Description : UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 1284

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02873	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02873	F2G661_ALTMD_201_353	100

Sequence based PCA Plot of the family - PF02873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=20
Motif2 Start=79 Length=11
Motif3 Start=23 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay