3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02872

Details:

PFam ID : PF02872

PFam Domain Description : 5'-nucleotidase, C-terminal domain

Number of Sequence in 50% Dataset : 359

Number of Sequence in Full Dataset : 2026

Average sequence length: 165.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02872	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02872	B9WY13_STRSU_450_566	100

Sequence based PCA Plot of the family - PF02872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=24 Length=8
Motif3 Start=64 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay