3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02870

Details:

PFam ID : PF02870

PFam Domain Description : 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 669

Average sequence length: 74.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02870	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02870	C8PJT6_9PROT_1_94	99.5

Sequence based PCA Plot of the family - PF02870 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay