3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02868

Details:

PFam ID : PF02868

PFam Domain Description : Thermolysin metallopeptidase, alpha-helical domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 431

Average sequence length: 158.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02868	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02868	A3U8N5_CROAH_492_700	100

Sequence based PCA Plot of the family - PF02868 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=8
Motif2 Start=28 Length=18
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay