3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02866

Details:

PFam ID : PF02866

PFam Domain Description : lactate/malate dehydrogenase, alpha/beta C-terminal domain

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 2180

Average sequence length: 159.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02866	B3RME3_TRIAD_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02866	C5DJS9_LACTC_183_261	99.8

Sequence based PCA Plot of the family - PF02866 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=18
Motif2 Start=2 Length=8
Motif3 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay