3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02863

Details:

PFam ID : PF02863

PFam Domain Description : Arginine repressor, C-terminal domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 607

Average sequence length: 69.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02863	D4YF98_9LACT_2_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02863	Q5WZ54_LEGPL_70_144	100

Sequence based PCA Plot of the family - PF02863 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay