3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02861

Details:

PFam ID : PF02861

PFam Domain Description : Clp amino terminal domain

Number of Sequence in 50% Dataset : 345

Number of Sequence in Full Dataset : 4560

Average sequence length: 50.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02861	D4YF98_9LACT_2_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02861	D6TEF6_9CHLR_418_470	97.7

Sequence based PCA Plot of the family - PF02861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay