3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02854

Details:

PFam ID : PF02854

PFam Domain Description : MIF4G domain

Number of Sequence in 50% Dataset : 274

Number of Sequence in Full Dataset : 913

Average sequence length: 202.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02854	D4YF98_9LACT_2_66	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02854	C1GKH6_PARBD_144_237	93.8

Sequence based PCA Plot of the family - PF02854 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=8
Motif3 Start=201 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay