3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02847

Details:

PFam ID : PF02847

PFam Domain Description : MA3 domain

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 558

Average sequence length: 109.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02847	B9GT53_POPTR_2_80	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02847	E9PCV8_HUMAN_1_39	59

Sequence based PCA Plot of the family - PF02847 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=14
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay