3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02845

Details:

PFam ID : PF02845

PFam Domain Description : CUE domain

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 500

Average sequence length: 40.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02845	A2EPF6_TRIVA_5_46	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02845	A3LVI3_PICST_205_246	98.9

Sequence based PCA Plot of the family - PF02845 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay