3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02841

Details:

PFam ID : PF02841

PFam Domain Description : Guanylate-binding protein, C-terminal domain

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 188

Average sequence length: 221.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02841	C1N3G1_MICPC_307_352	58.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02841	D8QWY2_SELML_311_446	98.9

Sequence based PCA Plot of the family - PF02841 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay