3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02839

Details:

PFam ID : PF02839

PFam Domain Description : Carbohydrate binding domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 967

Average sequence length: 42.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02839	C0BV52_9BIFI_386_430	54.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02839	Q7Y5S2_9CAUD_66_107	99.4

Sequence based PCA Plot of the family - PF02839 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=20
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay