3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02838

Details:

PFam ID : PF02838

PFam Domain Description : Glycosyl hydrolase family 20, domain 2

Number of Sequence in 50% Dataset : 346

Number of Sequence in Full Dataset : 898

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02838	D7BM05_ARCHD_82_165	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02838	D5GFG2_TUBMM_22_184	99.8

Sequence based PCA Plot of the family - PF02838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=18
Motif2 Start=98 Length=11
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay