3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02837

Details:

PFam ID : PF02837

PFam Domain Description : Glycosyl hydrolases family 2, sugar binding domain

Number of Sequence in 50% Dataset : 485

Number of Sequence in Full Dataset : 2585

Average sequence length: 164.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02837	D7BM05_ARCHD_82_165	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02837	D5S7Y4_STRPA_19_158	99.7

Sequence based PCA Plot of the family - PF02837 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=159 Length=8
Motif2 Start=124 Length=11
Motif3 Start=191 Length=23
Motif4 Start=243 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay