3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02836

Details:

PFam ID : PF02836

PFam Domain Description : Glycosyl hydrolases family 2, TIM barrel domain

Number of Sequence in 50% Dataset : 270

Number of Sequence in Full Dataset : 2106

Average sequence length: 239.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02836	A9UVH8_MONBE_219_283	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02836	B5JL77_9BACT_91_320	99.7

Sequence based PCA Plot of the family - PF02836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=245 Length=11
Motif2 Start=7 Length=8
Motif3 Start=59 Length=11
Motif4 Start=122 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay