3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02832

Details:

PFam ID : PF02832

PFam Domain Description : Flavivirus envelope glycoprotein M

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 73

Average sequence length: 90.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02832	E0YAP6_9FLAV_301_353	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02832	C0LIG8_9FLAV_593_688	100

Sequence based PCA Plot of the family - PF02832 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay