3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02830

Details:

PFam ID : PF02830

PFam Domain Description : V4R domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 342

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02830	B2SZD8_BURPP_106_173	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02830	B2SZD8_BURPP_106_173	100

Sequence based PCA Plot of the family - PF02830 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay