3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02829

Details:

PFam ID : PF02829

PFam Domain Description : 3H domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 231

Average sequence length: 98.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02829	D4KG85_9FIRM_73_138	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02829	Q8TVH7_METKA_162_267	100

Sequence based PCA Plot of the family - PF02829 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay