3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02827

Details:

PFam ID : PF02827

PFam Domain Description : cAMP-dependent protein kinase inhibitor

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 37

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02827	Q4T3R4_TETNG_2_27	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02827	E0VWN9_PEDHC_38_115	100

Sequence based PCA Plot of the family - PF02827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay