3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02826

Details:

PFam ID : PF02826

PFam Domain Description : D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 537

Number of Sequence in Full Dataset : 6252

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02826	D2L2Z5_9DELT_5_125	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02826	B4D8A9_9BACT_138_351	100

Sequence based PCA Plot of the family - PF02826 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=20
Motif2 Start=2 Length=11
Motif3 Start=74 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay