3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02825

Details:

PFam ID : PF02825

PFam Domain Description : WWE domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 268

Average sequence length: 72.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02825	A8XEL8_CAEBR_21_88	81.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02825	B0EU62_ENTDI_7_93	100

Sequence based PCA Plot of the family - PF02825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay