3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02824

Details:

PFam ID : PF02824

PFam Domain Description : TGS domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 2220

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02824	Q7WTB5_OENOE_1_51	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02824	E8N1A0_ANATU_369_429	100

Sequence based PCA Plot of the family - PF02824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=49 Length=11
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay