3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02823

Details:

PFam ID : PF02823

PFam Domain Description : ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 1378

Average sequence length: 79.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02823	Q7WTB5_OENOE_1_51	83.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02823	F0P192_WEEVC_1_97	100

Sequence based PCA Plot of the family - PF02823 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=27 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay