3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02820

Details:

PFam ID : PF02820

PFam Domain Description : mbt repeat

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 368

Average sequence length: 72

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02820	TX37_PHORI_2_43	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02820	E3NFG8_CAERE_189_275	100

Sequence based PCA Plot of the family - PF02820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay