3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02817

Details:

PFam ID : PF02817

PFam Domain Description : e3 binding domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 2323

Average sequence length: 38.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02817	B6J144_COXB2_117_141	7.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02817	Q6KCM0_EUGGR_168_190	100

Sequence based PCA Plot of the family - PF02817 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay