3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02816

Details:

PFam ID : PF02816

PFam Domain Description : Alpha-kinase family

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 266

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02816	E3L768_PUCGT_552_657	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02816	A0D8D0_PARTE_287_430	100

Sequence based PCA Plot of the family - PF02816 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=82 Length=8
Motif3 Start=105 Length=8
Motif4 Start=160 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay