3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02812

Details:

PFam ID : PF02812

PFam Domain Description : Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 1149

Average sequence length: 126.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02812	D4F488_EDWTA_5_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02812	C6S9S8_NEIME_13_71	100

Sequence based PCA Plot of the family - PF02812 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=69 Length=8
Motif3 Start=105 Length=11
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay