3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02809

Details:

PFam ID : PF02809

PFam Domain Description : Ubiquitin interaction motif

Number of Sequence in 50% Dataset : 321

Number of Sequence in Full Dataset : 401

Average sequence length: 17.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02809	E7MMZ2_9FIRM_374_493	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02809	Q5B2L4_EMENI_419_436	57

Sequence based PCA Plot of the family - PF02809 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay