3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02806

Details:

PFam ID : PF02806

PFam Domain Description : Alpha amylase, C-terminal all-beta domain

Number of Sequence in 50% Dataset : 236

Number of Sequence in Full Dataset : 1616

Average sequence length: 93.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02806	E7MMZ2_9FIRM_374_493	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02806	D1AVS4_STRM9_937_1014	95.9

Sequence based PCA Plot of the family - PF02806 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay