3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02805

Details:

PFam ID : PF02805

PFam Domain Description : Metal binding domain of Ada

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 506

Average sequence length: 63.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02805	C0QST8_PERMH_39_102	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02805	Q6BM08_DEBHA_12_79	99.6

Sequence based PCA Plot of the family - PF02805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay