3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02803

Details:

PFam ID : PF02803

PFam Domain Description : Thiolase, C-terminal domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 3902

Average sequence length: 125.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02803	E0VC61_PEDHC_207_289	71.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02803	Q24ZX1_DESHY_282_434	99.9

Sequence based PCA Plot of the family - PF02803 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=36 Length=20
Motif3 Start=139 Length=8
Motif4 Start=100 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay