3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02801

Details:

PFam ID : PF02801

PFam Domain Description : Beta-ketoacyl synthase, C-terminal domain

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 8732

Average sequence length: 108.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02801	B7VDU9_9BACT_169_226	57.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02801	A1WKX2_VEREI_3_78	99.9

Sequence based PCA Plot of the family - PF02801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=53 Length=23
Motif3 Start=11 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay