3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02800

Details:

PFam ID : PF02800

PFam Domain Description : Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 2243

Average sequence length: 148.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02800	A9BL23_HEMAN_195_352	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02800	A9BBK5_PROM4_161_328	97.1

Sequence based PCA Plot of the family - PF02800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=8
Motif2 Start=13 Length=43

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay