3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02797

Details:

PFam ID : PF02797

PFam Domain Description : Chalcone and stilbene synthases, C-terminal domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 627

Average sequence length: 135.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02797	D4ECM4_AGGAC_1_92	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02797	A2Z5C5_ORYSI_242_339	99.8

Sequence based PCA Plot of the family - PF02797 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=66 Length=8
Motif3 Start=10 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay